faculty

Wendy Thomas

wendyt@uw.edu
Professor

University of Washington

Bioengineering

Biophysical and Structural Biology

Computational Biology

Microbiology, Infection & Immunity

Molecular Biomechanics of Infection and Thrombosis

Faculty Contact Information

Building: North Foege (Bioengineering) Room: N430P Box: 35 5061 Phone: 206-616-3947 http://depts.washington.edu/bioe/portfolio-items/thomas/

Research Summary

The Thomas lab studies the mechanical regulation of adhesion proteins involved in infection and thrombosis. In particular, the lab studies catch bonds, which are receptor-ligand interactions that are activated by tensile mechanical force. We use a combination of tools, including single molecule force spectroscopy and microfluidic devices to characterize how molecules and cells respond to force, molecular biology to make proteins and cells for our studies, and computational models to relate primary structure to protein and cellular function.

DEI Statement

A major reason I embarked on a faculty career was the chance to make a difference for the next generation of apsiring scientists. I try to provide a role model for the next generation of low-income, gay and female aspiring scientists. I also seek to learn from to experts to complement my lived experiences in order to address structural racism in academia. I apply evidence-based approaches to lead my department’s Justice, Equity, Diversity and Inclusion (JEDI) efforts and to lead a diverse lab.

Training Summary

I received my undergraduate degree in Molecular Biology at Princeton University, a Masters in Applied Math and a doctorate in Bioengineering, both here at the University of Washington. To enhance my mentoring skills, I have attended the CIMER “Entering Mentoring” training, and “Culturally Aware Mentoring” trainings.

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Publications

The following publications were retrieved from PubMed:

Toggle switch residues control allosteric transitions in bacterial adhesins by participating in a concerted repacking of the protein core.

Kisiela DI, Magala P, Interlandi G, Carlucci LA, Ramos A, Tchesnokova V, Basanta B, Yarov-Yarovoy V, Avagyan H, Hovhannisyan A, Thomas WE, Stenkamp RE, Klevit RE, Sokurenko EV.

PLoS Pathog. 2021 Apr; 4(17)e1009440

FimH as a scaffold for regulated molecular recognition.

Ludwig SG, Kiyohara CL, Carlucci LA, Kisiela D, Sokurenko EV, Thomas WE.

J Biol Eng. 2021 Jan 12; 1(15)3

RMSD analysis of structures of the bacterial protein FimH identifies five conformations of its lectin domain.

Magala P, Klevit RE, Thomas WE, Sokurenko EV, Stenkamp RE.

Proteins. 2020 Apr; 4(88)593-603

Recognition of specific sialoglycan structures by oral streptococci impacts the severity of endocardial infection.

Bensing BA, Li L, Yakovenko O, Wong M, Barnard KN, Iverson TM, Lebrilla CB, Parrish CR, Thomas WE, Xiong Y, Sullam PM.

PLoS Pathog. 2019 Jun; 6(15)e1007896

Calpain drives pyroptotic vimentin cleavage, intermediate filament loss, and cell rupture that mediates immunostimulation.

Davis MA, Fairgrieve MR, Den Hartigh A, Yakovenko O, Duvvuri B, Lood C, Thomas WE, Fink SL, Gale M Jr.

Proc Natl Acad Sci U S A. 2019 Mar 12; 11(116)5061-5070

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Lab Information

Location: University of Washington
Building: Foege
Room: N223C or N430P
Box: 355061
Phone: 206-685-4436
http://faculty.washington.edu/wendyt/index.html