faculty

Roger Bumgarner

rogerb@uw.edu
Associate Professor

University of Washington

Microbiology

Gene Expression, Cell Cycle & Chromosome Biology

Genetics, Genomics & Evolution (Area Director)

Microbiology, Infection & Immunity

Faculty Contact Information

Building: Rosen Building, South Lake Union Room: Room 262B Box: 358070 Phone: 206-732-6137 https://microbiology.washington.edu/users/roger-e-bumgarner

Research Summary

A fundamental issue facing modern biology is the development of methods and tools to convert genomics and function genomics data into mechanistic understanding. Genome sequences and computational methods have provided us with tools to identify and annotate genes and other functional sequences with varying degrees of accuracy. Annotated sequence information in turn enables tools such as RNA-Seq, microarrays, 2-D gels, protein mass spectrometry and yeast 2-hybrids to measure RNA and protein levels and physical interactions on genome-wide or near genome-wide scales.

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Publications

The following publications were retrieved from PubMed:

Letter to the Editor regarding Qui et al: "Cutibacterium acnes and the shoulder microbiome".

Long DR, Hsu JE, Salipante SJ, Bumgarner RE.

J Shoulder Elbow Surg. 2019 Aug; 8(28)e275-e276

Temporal genetic association and temporal genetic causality methods for dissecting complex networks.

Lin L, Chen Q, Hirsch JP, Yoo S, Yeung K, Bumgarner RE, Tu Z, Schadt EE, Zhu J.

Nat Commun. 2018 Sep 28; 1(9)3980

Draft Genome Sequence of <i>Tannerella forsythia</i> Clinical Isolate 9610.

Hanson-Drury S, To TT, Liu Q, Vo AT, Kim M, Watling M, Bumgarner RS, McLean JS.

Genome Announc. 2017 Mar 23; 12(5)

Human Serum-Specific Activation of Alternative Sigma Factors, the Stress Responders in Aggregatibacter actinomycetemcomitans.

Tang-Siegel G, Bumgarner R, Ruiz T, Kittichotirat W, Chen W, Chen C.

PLoS One. 2016; 8(11)e0160018

Variable Nitrogen Fixation in Wild Populus.

Doty SL, Sher AW, Fleck ND, Khorasani M, Bumgarner RE, Khan Z, Ko AW, Kim SH, DeLuca TH.

PLoS One. 2016; 5(11)e0155979

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