faculty

Cole Trapnell

coletrap@uw.edu
Associate Professor

University of Washington

Genome Sciences

Computational Biology

Developmental Biology, Stem Cells & Aging

Genetics, Genomics & Evolution

Developmental genetics using single cell genomics

Faculty Contact Information

Building: Foege Room: S-333C Box: 355065 https://cole-trapnell-lab.github.io/
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Publications

The following publications were retrieved from PubMed:

Single cell biology-a Keystone Symposia report.

Cable J, Elowitz MB, Domingos AI, Habib N, Itzkovitz S, Hamidzada H, Balzer MS, Yanai I, Liberali P, Whited J, Streets A, Cai L, Stergachis AB, Hong CKY, Keren L, Guilliams M, Alon U, Shalek AK, Hamel R, Pfau SJ, Raj A, Quake SR, Zhang NR, Fan J, Trapnell C, Wang B, Greenwald NF, Vento-Tormo R, Santos SDM, Spencer SL, Garcia HG, Arekatla G, Gaiti F, Arbel-Goren R, Rulands S, Junker JP, Klein AM, Morris SA, Murray JI, Galloway KE, Ratz M, Romeike M.

Ann N Y Acad Sci. 2021 Oct 3;

Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation.

Bonora G, Ramani V, Singh R, Fang H, Jackson DL, Srivatsan S, Qiu R, Lee C, Trapnell C, Shendure J, Duan Z, Deng X, Noble WS, Disteche CM.

Genome Biol. 2021 Sep 27; 1(22)279

Multipotent progenitors and hematopoietic stem cells arise independently from hemogenic endothelium in the mouse embryo.

Dignum T, Varnum-Finney B, Srivatsan SR, Dozono S, Waltner O, Heck AM, Ishida T, Nourigat-McKay C, Jackson DL, Rafii S, Trapnell C, Bernstein ID, Hadland B.

Cell Rep. 2021 Sep 14; 11(36)109675

Embryo-scale, single-cell spatial transcriptomics.

Srivatsan SR, Regier MC, Barkan E, Franks JM, Packer JS, Grosjean P, Duran M, Saxton S, Ladd JJ, Spielmann M, Lois C, Lampe PD, Shendure J, Stevens KR, Trapnell C.

Science. 2021 Jul 2; 6550(373)111-117

Neural G0: a quiescent-like state found in neuroepithelial-derived cells and glioma.

O'Connor SA, Feldman HM, Arora S, Hoellerbauer P, Toledo CM, Corrin P, Carter L, Kufeld M, Bolouri H, Basom R, Delrow J, McFaline-Figueroa JL, Trapnell C, Pollard SM, Patel A, Paddison PJ, Plaisier CL.

Mol Syst Biol. 2021 Jun; 6(17)e9522

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