faculty
Gabriele Varani
varani@uw.edu
Professor
University of Washington
Biophysical and Structural Biology
Cancer Biology
Small molecule inhibitors of RNA
Faculty Contact Information
Research Summary
We research and discover small drug-like molecules that bind to regulatory RNAs in oncogenic and tumor suppressive mRNAs, non coding RNAs and viruses. We use biophysical methods and structure-based design to improve their potency and pharmacology in Academia and through biotech spin-offs in oncology.
DEI Statement
Dr. Varani has been very actively involved in education of under-represented minorities (URMs) and has a very strong professional interest and personal commitment to education of underrepresented minorities. He has done so as a mentor to multiple undergraduate and graduate students, as member of the Faculty Advisory Board of IMSD (Initiative to Maximize Student Diversity); he is director of UW-PREP since 2011, a post-baccalaurate (PREP) program, where Dr. Varani is also the PI; he has also been a member of the Health Science Center Minority Center Advisory Board and of the Diversity Coun
Training Summary
Dr Varani has been director and PI of UW PREP, a program that bring recent URM graduates to the UW to prepare for admissionto graduate school.
https://depts.washington.edu/uwprep/
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Publications
The following publications were retrieved from PubMed:
Sharma S, Pisignano G, Merulla J, Catapano CV, Varani G.
Nucleic Acids Res. 2022 Oct 28; 19(50)11331-11343
A Slow Dynamic RNA Switch Regulates Processing of microRNA-21.
Shortridge MD, Olsen GL, Yang W, Walker MJ, Varani G.
J Mol Biol. 2022 Aug 30; 16(434)167694
Zappi D, Varani G, Cozzoni E, Iatsunskyi I, Laschi S, Giardi MT.
Nanomaterials (Basel). 2021 Dec 17; 12(11)
Earle SG, Lobanovska M, Lavender H, Tang C, Exley RM, Ramos-Sevillano E, Browning DF, Kostiou V, Harrison OB, Bratcher HB, Varani G, Tang CM, Wilson DJ, Maiden MCJ.
PLoS Pathog. 2021 Oct; 10(17)e1009992
Efficient NMR Screening Approach to Discover Small Molecule Fragments Binding Structured RNA.
Shortridge MD, Varani G.
ACS Med Chem Lett. 2021 Aug 12; 8(12)1253-1260
Al Mohtar A, Pinto ML, Neves A, Nunes S, Zappi D, Varani G, Ramos AM, Melo MJ, Wallaszkovits N, Lahoz Rodrigo JI, Herlt K, Lopes J.
Sci Rep. 2021 Aug 9; 1(11)16074
Marrella A, Fedi A, Varani G, Vaccari I, Fato M, Firpo G, Guida P, Aceto N, Scaglione S.
PLoS One. 2021; 1(16)e0245536
Giardi MT, Zappi D, Turemis M, Varani G, Lo Celso F, Barone G, Calandra P, Antonacci A, Scognamiglio V.
Talanta. 2021 Mar 1; (224)121854
Zappi D, Ramma MM, Scognamiglio V, Antonacci A, Varani G, Giardi MT.
Biosensors (Basel). 2020 Nov 13; 11(10)
Vitale C, Fedi A, Marrella A, Varani G, Fato M, Scaglione S.
Polymers (Basel). 2020 Oct 24; 11(12)
Zappi D, Coronado E, Soljan V, Basile G, Varani G, Turemis M, Giardi MT.
Talanta. 2021 Jan 1; (221)121438
Sharma S, Varani G.
Biochem Biophys Res Commun. 2020 Oct 22; 4(531)522-527
The Long Noncoding RNA CCAT2 Induces Chromosomal Instability Through BOP1-AURKB Signaling.
Chen B, Dragomir MP, Fabris L, Bayraktar R, Knutsen E, Liu X, Tang C, Li Y, Shimura T, Ivkovic TC, De Los Santos MC, Anfossi S, Shimizu M, Shah MY, Ling H, Shen P, Multani AS, Pardini B, Burks JK, Katayama H, Reineke LC, Huo L, Syed M, Song S, Ferracin M, Oki E, Fromm B, Ivan C, Bhuvaneshwar K, Gusev Y, Mimori K, Menter D, Sen S, Matsuyama T, Uetake H, Vasilescu C, Kopetz S, Parker-Thornburg J, Taguchi A, Hanash SM, Girnita L, Slaby O, Goel A, Varani G, Gagea M, Li C, Ajani JA, Calin GA.
Gastroenterology. 2020 Dec; 6(159)2146-2162.e33
3D fluid-dynamic ovarian cancer model resembling systemic drug administration for efficacy assay.
Marrella A, Varani G, Aiello M, Vaccari I, Vitale C, Mojzisek M, Degrassi C, Scaglione S.
ALTEX. 2021; 1(38)82-94
Longo LM, Despotović D, Weil-Ktorza O, Walker MJ, Jabłońska J, Fridmann-Sirkis Y, Varani G, Metanis N, Tawfik DS.
Proc Natl Acad Sci U S A. 2020 Jul 7; 27(117)15731-15739
An evolutionarily conserved RNA structure in the functional core of the lincRNA Cyrano.
Jones AN, Pisignano G, Pavelitz T, White J, Kinisu M, Forino N, Albin D, Varani G.
RNA. 2020 Sep; 9(26)1234-1246
Pacelli S, Paolicelli P, Petralito S, Subham S, Gilmore D, Varani G, Yang G, Lin D, Casadei MA, Paul A.
ACS Appl Bio Mater. 2020 Feb 17; 2(3)945-951
Walker MJ, Shortridge MD, Albin DD, Cominsky LY, Varani G.
J Mol Biol. 2020 Mar 27; 7(432)1841-1855
Barnwal RP, Kaur M, Heckert A, Gartia J, Varani G.
Biochem J. 2020 Jan 31; 2(477)491-508
Multimodal Long Noncoding RNA Interaction Networks: Control Panels for Cell Fate Specification.
Smith KN, Miller SC, Varani G, Calabrese JM, Magnuson T.
Genetics. 2019 Dec; 4(213)1093-1110
Decrypting noncoding RNA interactions, structures, and functional networks.
Fabbri M, Girnita L, Varani G, Calin GA.
Genome Res. 2019 Sep; 9(29)1377-1388
Design of RNA-targeting macrocyclic peptides.
Walker MJ, Varani G.
Methods Enzymol. 2019; (623)339-372
Shea D, Hsu CC, Bi TM, Paranjapye N, Childers MC, Cochran J, Tomberlin CP, Wang L, Paris D, Zonderman J, Varani G, Link CD, Mullan M, Daggett V.
Proc Natl Acad Sci U S A. 2019 Apr 30; 18(116)8895-8900
An Allosteric Switch Primes Sequence-Specific DNA Recognition.
Walker MJ, Varani G.
Cell. 2019 Jan 10; 1-2(176)4-6
Sun YT, Shortridge MD, Varani G.
Chembiochem. 2019 Apr 1; 7(20)931-939
Bochicchio A, Krepl M, Yang F, Varani G, Sponer J, Carloni P.
PLoS Comput Biol. 2018 Dec; 12(14)e1006642
Simple yet functional phosphate-loop proteins.
Romero Romero ML, Yang F, Lin YR, Toth-Petroczy A, Berezovsky IN, Goncearenco A, Yang W, Wellner A, Kumar-Deshmukh F, Sharon M, Baker D, Varani G, Tawfik DS.
Proc Natl Acad Sci U S A. 2018 Dec 18; 51(115)E11943-E11950
An ultra-high affinity ligand of HIV-1 TAR reveals the RNA structure recognized by P-TEFb.
Shortridge MD, Wille PT, Jones AN, Davidson A, Bogdanovic J, Arts E, Karn J, Robinson JA, Varani G.
Nucleic Acids Res. 2019 Feb 20; 3(47)1523-1531
Experimental and Modeling Study of Drug Release from HPMC-Based Erodible Oral Thin Films.
Adrover A, Varani G, Paolicelli P, Petralito S, Di Muzio L, Casadei MA, Tho I.
Pharmaceutics. 2018 Nov 9; 4(10)
Paolicelli P, Petralito S, Varani G, Nardoni M, Pacelli S, Di Muzio L, Tirillò J, Bartuli C, Cesa S, Casadei MA, Adrover A.
Int J Pharm. 2018 Aug 25; 1-2(547)226-234
Comprehensive computational design of ordered peptide macrocycles.
Hosseinzadeh P, Bhardwaj G, Mulligan VK, Shortridge MD, Craven TW, Pardo-Avila F, Rettie SA, Kim DE, Silva DA, Ibrahim YM, Webb IK, Cort JR, Adkins JN, Varani G, Baker D.
Science. 2017 Dec 15; 6369(358)1461-1466
Yang W, Hsu PL, Yang F, Song JE, Varani G.
Nucleic Acids Res. 2018 Jan 25; 2(46)493-503
Paolicelli P, Varani G, Pacelli S, Ogliani E, Nardoni M, Petralito S, Adrover A, Casadei MA.
Carbohydr Polym. 2017 Oct 15; (174)960-969
Applications of NMR to structure determination of RNAs large and small.
Barnwal RP, Yang F, Varani G.
Arch Biochem Biophys. 2017 Aug 15; (628)42-56
Pisignano G, Napoli S, Magistri M, Mapelli SN, Pastori C, Di Marco S, Civenni G, Albino D, Enriquez C, Allegrini S, Mitra A, D'Ambrosio G, Mello-Grand M, Chiorino G, Garcia-Escudero R, Varani G, Carbone GM, Catapano CV.
Nat Commun. 2017 May 30; (8)15622
Nemec CM, Yang F, Gilmore JM, Hintermair C, Ho YH, Tseng SC, Heidemann M, Zhang Y, Florens L, Gasch AP, Eick D, Washburn MP, Varani G, Ansari AZ.
Proc Natl Acad Sci U S A. 2017 May 16; 20(114)E3944-E3953
Shortridge MD, Walker MJ, Pavelitz T, Chen Y, Yang W, Varani G.
ACS Chem Biol. 2017 Jun 16; 6(12)1611-1620
Abulwerdi FA, Shortridge MD, Sztuba-Solinska J, Wilson R, Le Grice SF, Varani G, Schneekloth JS Jr.
J Med Chem. 2016 Dec 22; 24(59)11148-11160
Ultraslow Domain Motions in HIV-1 TAR RNA Revealed by Solid-State Deuterium NMR.
Huang W, Emani PS, Varani G, Drobny GP.
J Phys Chem B. 2017 Jan 12; 1(121)110-117
Barnwal RP, Loh E, Godin KS, Yip J, Lavender H, Tang CM, Varani G.
Nucleic Acids Res. 2016 Nov 2; 19(44)9426-9437
Yang F, Hsu P, Lee SD, Yang W, Hoskinson D, Xu W, Moore C, Varani G.
RNA. 2017 Jan; 1(23)98-107
Targeted inhibition of oncogenic miR-21 maturation with designed RNA-binding proteins.
Chen Y, Yang F, Zubovic L, Pavelitz T, Yang W, Godin K, Walker M, Zheng S, Macchi P, Varani G.
Nat Chem Biol. 2016 Sep; 9(12)717-23
Structure of a low-population binding intermediate in protein-RNA recognition.
Borkar AN, Bardaro MF Jr, Camilloni C, Aprile FA, Varani G, Vendruscolo M.
Proc Natl Acad Sci U S A. 2016 Jun 28; 26(113)7171-6
Chen Y, Zubovic L, Yang F, Godin K, Pavelitz T, Castellanos J, Macchi P, Varani G.
Nucleic Acids Res. 2016 May 19; 9(44)4381-95
Structure based approaches for targeting non-coding RNAs with small molecules.
Shortridge MD, Varani G.
Curr Opin Struct Biol. 2015 Feb; (30)79-88
Targeting Influenza A Virus RNA Promoter.
Bottini A, De SK, Wu B, Tang C, Varani G, Pellecchia M.
Chem Biol Drug Des. 2015 Oct; 4(86)663-73
Musiani F, Rossetti G, Capece L, Gerger TM, Micheletti C, Varani G, Carloni P.
J Am Chem Soc. 2014 Nov 5; 44(136)15631-7
Designed α-sheet peptides inhibit amyloid formation by targeting toxic oligomers.
Hopping G, Kellock J, Barnwal RP, Law P, Bryers J, Varani G, Caughey B, Daggett V.
Elife. 2014 Jul 15; (3)e01681
Hsu PL, Yang F, Smith-Kinnaman W, Yang W, Song JE, Mosley AL, Varani G.
J Mol Biol. 2014 Aug 12; 16(426)2970-81
miRNA sensitivity to Drosha levels correlates with pre-miRNA secondary structure.
Sperber H, Beem A, Shannon S, Jones R, Banik P, Chen Y, Ku S, Varani G, Yao S, Ruohola-Baker H.
RNA. 2014 May; 5(20)621-31
The interactome of the atypical phosphatase Rtr1 in Saccharomyces cerevisiae.
Smith-Kinnaman WR, Berna MJ, Hunter GO, True JD, Hsu P, Cabello GI, Fox MJ, Varani G, Mosley AL.
Mol Biosyst. 2014 Jul; 7(10)1730-41
Emani PS, Bardaro MF Jr, Huang W, Aragon S, Varani G, Drobny GP.
J Phys Chem B. 2014 Feb 20; 7(118)1726-42
A novel small-molecule binds to the influenza A virus RNA promoter and inhibits viral replication.
Lee MK, Bottini A, Kim M, Bardaro MF Jr, Zhang Z, Pellecchia M, Choi BS, Varani G.
Chem Commun (Camb). 2014 Jan 11; 3(50)368-70
RNA/Peptide Binding Driven by Electrostatics-Insight from Bidirectional Pulling Simulations.
Do TN, Carloni P, Varani G, Bussi G.
J Chem Theory Comput. 2013 Mar 12; 3(9)1720-30
Barnwal RP, Lee SD, Moore C, Varani G.
Proc Natl Acad Sci U S A. 2012 Dec 26; 52(109)21342-7
GFT projection NMR for efficient (1)H/ (13)C sugar spin system identification in nucleic acids.
Atreya HS, Sathyamoorthy B, Jaipuria G, Beaumont V, Varani G, Szyperski T.
J Biomol NMR. 2012 Dec; 4(54)337-42
Aminoglycoside antibiotics bind to the influenza A virus RNA promoter.
Kim H, Lee MK, Ko J, Park CJ, Kim M, Jeong Y, Hong S, Varani G, Choi BS.
Mol Biosyst. 2012 Nov; 11(8)2857-9
Preparation of RNA samples with narrow line widths for solid state NMR investigations.
Huang W, Bardaro MF Jr, Varani G, Drobny GP.
J Magn Reson. 2012 Oct; (223)51-4
Independent alignment of RNA for dynamic studies using residual dipolar couplings.
Bardaro MF Jr, Varani G.
J Biomol NMR. 2012 Sep; 1(54)69-80
Correction to "Theory of nonrigid rotational motion applied to NMR relaxation in RNA".
Emani PS, Olsen GL, Varani G, Drobny GP.
J Phys Chem A. 2012 Jul 5; 26(116)7253-60
Counterion Redistribution upon Binding of a Tat-Protein Mimic to HIV-1 TAR RNA.
Do TN, Ippoliti E, Carloni P, Varani G, Parrinello M.
J Chem Theory Comput. 2012 Feb 14; 2(8)688-94
Examining the relationship between RNA function and motion using nuclear magnetic resonance.
Bardaro MF Jr, Varani G.
Wiley Interdiscip Rev RNA. 2012 Jan-Feb; 1(3)122-32
The H/ACA RNP assembly factor SHQ1 functions as an RNA mimic.
Walbott H, Machado-Pinilla R, Liger D, Blaud M, Réty S, Grozdanov PN, Godin K, van Tilbeurgh H, Varani G, Meier UT, Leulliot N.
Genes Dev. 2011 Nov 15; 22(25)2398-408
Interactions of protein side chains with RNA defined with REDOR solid state NMR.
Huang W, Varani G, Drobny GP.
J Biomol NMR. 2011 Nov; 3(51)347-56
Comparative analysis of glutaredoxin domains from bacterial opportunistic pathogens.
Leeper T, Zhang S, Van Voorhis WC, Myler PJ, Varani G.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Sep 1; Pt 9(67)1141-7
Structural genomics of infectious disease drug targets: the SSGCID.
Stacy R, Begley DW, Phan I, Staker BL, Van Voorhis WC, Varani G, Buchko GW, Stewart LJ, Myler PJ.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Sep 1; Pt 9(67)979-84
Theory of nonrigid rotational motion applied to NMR relaxation in RNA.
Emani PS, Olsen GL, Varani G, Drobny GP.
J Phys Chem A. 2011 Nov 10; 44(115)12055-69
γ-AApeptides bind to RNA by mimicking RNA-binding proteins.
Niu Y, Jones AJ, Wu H, Varani G, Cai J.
Org Biomol Chem. 2011 Oct 7; 19(9)6604-9
Finding the missing code of RNA recognition by PUF proteins.
Chen Y, Varani G.
Chem Biol. 2011 Jul 29; 7(18)821-3
A small-molecule probe induces a conformation in HIV TAR RNA capable of binding drug-like fragments.
Davidson A, Begley DW, Lau C, Varani G.
J Mol Biol. 2011 Jul 29; 5(410)984-96
Lalonde MS, Lobritz MA, Ratcliff A, Chamanian M, Athanassiou Z, Tyagi M, Wong J, Robinson JA, Karn J, Varani G, Arts EJ.
PLoS Pathog. 2011 May; 5(7)e1002038
Norville IH, O'Shea K, Sarkar-Tyson M, Zheng S, Titball RW, Varani G, Harmer NJ.
Biochem J. 2011 Aug 1; 3(437)413-22
13C/15N-19F intermolecular REDOR NMR study of the interaction of TAR RNA with Tat peptides.
Huang W, Varani G, Drobny GP.
J Am Chem Soc. 2010 Dec 22; 50(132)17643-5
Emani PS, Olsen GL, Echodu DC, Varani G, Drobny GP.
J Phys Chem B. 2010 Dec 9; 48(114)15991-6002
Lunde BM, Reichow SL, Kim M, Suh H, Leeper TC, Yang F, Mutschler H, Buratowski S, Meinhart A, Varani G.
Nat Struct Mol Biol. 2010 Oct; 10(17)1195-201
Davidson A, Patora-Komisarska K, Robinson JA, Varani G.
Nucleic Acids Res. 2011 Jan; 1(39)248-56
Begley DW, Zheng S, Varani G.
Chem Biol Drug Des. 2010 Sep 1; 3(76)218-33
Novel protein-protein contacts facilitate mRNA 3'-processing signal recognition by Rna15 and Hrp1.
Leeper TC, Qu X, Lu C, Moore C, Varani G.
J Mol Biol. 2010 Aug 20; 3(401)334-49
Real-time multidimensional NMR follows RNA folding with second resolution.
Lee MK, Gal M, Frydman L, Varani G.
Proc Natl Acad Sci U S A. 2010 May 18; 20(107)9192-7
Intermediate rate atomic trajectories of RNA by solid-state NMR spectroscopy.
Olsen GL, Bardaro MF Jr, Echodu DC, Drobny GP, Varani G.
J Am Chem Soc. 2010 Jan 13; 1(132)303-8
Mitoxantrone analogues as ligands for a stem-loop structure of tau pre-mRNA.
Liu Y, Peacey E, Dickson J, Donahue CP, Zheng S, Varani G, Wolfe MS.
J Med Chem. 2009 Nov 12; 21(52)6523-6
Hydration dependent dynamics in RNA.
Olsen GL, Bardaro MF Jr, Echodu DC, Drobny GP, Varani G.
J Biomol NMR. 2009 Sep; 1-2(45)133-42
Davidson A, Leeper TC, Athanassiou Z, Patora-Komisarska K, Karn J, Robinson JA, Varani G.
Proc Natl Acad Sci U S A. 2009 Jul 21; 29(106)11931-6
Zheng S, Chen Y, Donahue CP, Wolfe MS, Varani G.
Chem Biol. 2009 May 29; 5(16)557-66
Godin KS, Walbott H, Leulliot N, van Tilbeurgh H, Varani G.
J Mol Biol. 2009 Jul 10; 2(390)231-44
How binding of small molecule and peptide ligands to HIV-1 TAR alters the RNA motional landscape.
Bardaro MF Jr, Shajani Z, Patora-Komisarska K, Robinson JA, Varani G.
Nucleic Acids Res. 2009 Apr; 5(37)1529-40
Echodu D, Goobes G, Shajani Z, Pederson K, Meints G, Varani G, Drobny G.
J Phys Chem B. 2008 Nov 6; 44(112)13934-44
Cell-free selection of RNA-binding proteins using in vitro compartmentalization.
Chen Y, Mandic J, Varani G.
Nucleic Acids Res. 2008 Nov; 19(36)e128
Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA.
Gherghe CM, Shajani Z, Wilkinson KA, Varani G, Weeks KM.
J Am Chem Soc. 2008 Sep 17; 37(130)12244-5
Shajani Z, Varani G.
Biochemistry. 2008 Jul 22; 29(47)7617-25
Nop10 is a conserved H/ACA snoRNP molecular adaptor.
Reichow SL, Varani G.
Biochemistry. 2008 Jun 10; 23(47)6148-56
Liu J, Begley D, Mitchell DD, Verlinde CLMJ, Varani G, Fan E.
Chem Biol Drug Des. 2008 May; 5(71)408-419
Olsen GL, Echodu DC, Shajani Z, Bardaro MF Jr, Varani G, Drobny GP.
J Am Chem Soc. 2008 Mar 12; 10(130)2896-7
Structure of the yeast SR protein Npl3 and Interaction with mRNA 3'-end processing signals.
Deka P, Bucheli ME, Moore C, Buratowski S, Varani G.
J Mol Biol. 2008 Jan 4; 1(375)136-50
Zheng S, Robertson TA, Varani G.
FEBS J. 2007 Dec; 24(274)6378-91
Moehle K, Athanassiou Z, Patora K, Davidson A, Varani G, Robinson JA.
Angew Chem Int Ed Engl. 2007; 47(46)9101-4
How arginine-rich domains coordinate mRNA maturation events.
Godin KS, Varani G.
RNA Biol. 2007 Aug; 2(4)69-75
Leulliot N, Godin KS, Hoareau-Aveilla C, Quevillon-Cheruel S, Varani G, Henry Y, Van Tilbeurgh H.
J Mol Biol. 2007 Aug 31; 5(371)1338-53
RNA-binding proteins: modular design for efficient function.
Lunde BM, Moore C, Varani G.
Nat Rev Mol Cell Biol. 2007 Jun; 6(8)479-90
Binding of U1A protein changes RNA dynamics as observed by 13C NMR relaxation studies.
Shajani Z, Drobny G, Varani G.
Biochemistry. 2007 May 22; 20(46)5875-83
Watters AL, Deka P, Corrent C, Callender D, Varani G, Sosnick T, Baker D.
Cell. 2007 Feb 9; 3(128)613-24
The structure and function of small nucleolar ribonucleoproteins.
Reichow SL, Hamma T, Ferré-D'Amaré AR, Varani G.
Nucleic Acids Res. 2007; 5(35)1452-64
Athanassiou Z, Patora K, Dias RL, Moehle K, Robinson JA, Varani G.
Biochemistry. 2007 Jan 23; 3(46)741-51
Dantas G, Corrent C, Reichow SL, Havranek JJ, Eletr ZM, Isern NG, Kuhlman B, Varani G, Merritt EA, Baker D.
J Mol Biol. 2007 Mar 2; 4(366)1209-21
Miller PA, Shajani Z, Meints GA, Caplow D, Goobes G, Varani G, Drobny GP.
J Am Chem Soc. 2006 Dec 20; 50(128)15970-1
Mudeppa DG, Pang CK, Tsuboi T, Endo Y, Buckner FS, Varani G, Rathod PK.
Mol Biochem Parasitol. 2007 Feb; 2(151)216-9
NMR studies of dynamics in RNA and DNA by 13C relaxation.
Shajani Z, Varani G.
Biopolymers. 2007 Aug 5-15; 5-6(86)348-59
Qu X, Perez-Canadillas JM, Agrawal S, De Baecke J, Cheng H, Varani G, Moore C.
J Biol Chem. 2007 Jan 19; 3(282)2101-15
Robertson TA, Varani G.
Proteins. 2007 Feb 1; 2(66)359-74
Dantas G, Watters AL, Lunde BM, Eletr ZM, Isern NG, Roseman T, Lipfert J, Doniach S, Tompa M, Kuhlman B, Stoddard BL, Varani G, Baker D.
J Mol Biol. 2006 Oct 6; 5(362)1004-24
Structural biology: RNA switches function.
Reichow S, Varani G.
Nature. 2006 Jun 29; 7097(441)1054-5
Structure of stem-loop IV of Tetrahymena telomerase RNA.
Chen Y, Fender J, Legassie JD, Jarstfer MB, Bryan TM, Varani G.
EMBO J. 2006 Jul 12; 13(25)3156-66
High-resolution structural validation of the computational redesign of human U1A protein.
Dobson N, Dantas G, Baker D, Varani G.
Structure. 2006 May; 5(14)847-56
Cho HD, Chen Y, Varani G, Weiner AM.
J Biol Chem. 2006 Apr 7; 14(281)9801-11
The Cbf5-Nop10 complex is a molecular bracket that organizes box H/ACA RNPs.
Hamma T, Reichow SL, Varani G, Ferré-D'Amaré AR.
Nat Struct Mol Biol. 2005 Dec; 12(12)1101-7
1H, 13C and 15N resonance assignments of URNdesign, a computationally redesigned RRM protein.
Dobson N, Dantas G, Varani G.
J Biomol NMR. 2005 Oct; 2(33)135
Identification of the optimal third generation antifolate against P. falciparum and P. vivax.
Hunt SY, Detering C, Varani G, Jacobus DP, Schiehser GA, Shieh HM, Nevchas I, Terpinski J, Sibley CH.
Mol Biochem Parasitol. 2005 Dec; 2(144)198-205
TAR RNA recognition by a cyclic peptidomimetic of Tat protein.
Leeper TC, Athanassiou Z, Dias RL, Robinson JA, Varani G.
Biochemistry. 2005 Sep 20; 37(44)12362-72
Differential drug binding by the highly conserved Plasmodium falciparum thymidylate synthase.
Pang CK, De SK, White J, Buckner FS, Varani G, Rathod PK.
Mol Biochem Parasitol. 2005 Sep; 1(143)121-4
Monitoring tat peptide binding to TAR RNA by solid-state 31P-19F REDOR NMR.
Olsen GL, Edwards TE, Deka P, Varani G, Sigurdsson ST, Drobny GP.
Nucleic Acids Res. 2005; 11(33)3447-54
Shajani Z, Varani G.
J Mol Biol. 2005 Jun 17; 4(349)699-715
Deka P, Rajan PK, Perez-Canadillas JM, Varani G.
J Mol Biol. 2005 Apr 8; 4(347)719-33
The structure of an enzyme-activating fragment of human telomerase RNA.
Leeper TC, Varani G.
RNA. 2005 Apr; 4(11)394-403
Chen Y, Kortemme T, Robertson T, Baker D, Varani G.
Nucleic Acids Res. 2004; 17(32)5147-62
NMR studies of protein-nucleic acid interactions.
Varani G, Chen Y, Leeper TC.
Methods Mol Biol. 2004; (278)289-312
Detering C, Varani G.
J Med Chem. 2004 Aug 12; 17(47)4188-201
A new alpha-helical extension promotes RNA binding by the dsRBD of Rnt1p RNAse III.
Leulliot N, Quevillon-Cheruel S, Graille M, van Tilbeurgh H, Leeper TC, Godin KS, Edwards TE, Sigurdsson ST, Rozenkrants N, Nagel RJ, Ares M, Varani G.
EMBO J. 2004 Jul 7; 13(23)2468-77
Athanassiou Z, Dias RL, Moehle K, Dobson N, Varani G, Robinson JA.
J Am Chem Soc. 2004 Jun 9; 22(126)6906-13
Davis B, Afshar M, Varani G, Murchie AI, Karn J, Lentzen G, Drysdale M, Bower J, Potter AJ, Starkey ID, Swarbrick T, Aboul-ela F.
J Mol Biol. 2004 Feb 13; 2(336)343-56
Design of a novel globular protein fold with atomic-level accuracy.
Kuhlman B, Dantas G, Ireton GC, Varani G, Stoddard BL, Baker D.
Science. 2003 Nov 21; 5649(302)1364-8
Recognition of GU-rich polyadenylation regulatory elements by human CstF-64 protein.
Pérez Cañadillas JM, Varani G.
EMBO J. 2003 Jun 2; 11(22)2821-30
Park CJ, Bae SH, Lee MK, Varani G, Choi BS.
Nucleic Acids Res. 2003 Jun 1; 11(31)2824-32
The solution structure of an essential stem-loop of human telomerase RNA.
Leeper T, Leulliot N, Varani G.
Nucleic Acids Res. 2003 May 15; 10(31)2614-21
Castrignanò T, Chillemi G, Varani G, Desideri A.
Biophys J. 2002 Dec; 6(83)3542-52
Greatorex J, Gallego J, Varani G, Lever A.
J Mol Biol. 2002 Sep 20; 3(322)543-57
A conserved RNA structure within the HCV IRES eIF3-binding site.
Collier AJ, Gallego J, Klinck R, Cole PT, Harris SJ, Harrison GP, Aboul-Ela F, Varani G, Walker S.
Nat Struct Biol. 2002 May; 5(9)375-80
How a rotavirus hijacks the human protein synthesis machinery.
Varani G, Allain FH.
Nat Struct Biol. 2002 Mar; 3(9)158-60
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