faculty

Brian Beliveau

beliveau@uw.edu
Assistant Professor

University of Washington

Genome Sciences

Gene Expression, Cell Cycle & Chromosome Biology

Genetics, Genomics & Evolution

Technologies for visualizing chromosomes in 3D

Faculty Contact Information

Building: Foege South Room: 303B Box: 355065 Phone: 206-543-7254 http://www.gs.washington.edu/faculty/beliveau.htm

Research Summary

We are interested in understanding how chromosomes are organized in the nucleus at scales ranging from chromosome territories down to individual genomic elements and how this organization affects DNA transactions such as transcription, replication, and repair. We use computational and molecular tools in combination with super-resolution and advanced quantitative microscopy to investigate the causes and consequences of 3D genome organization. We also develop enabling molecular and imaging technologies.

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Publications

The following publications were retrieved from PubMed:

Immuno-SABER enables highly multiplexed and amplified protein imaging in tissues.

Saka SK, Wang Y, Kishi JY, Zhu A, Zeng Y, Xie W, Kirli K, Yapp C, Cicconet M, Beliveau BJ, Lapan SW, Yin S, Lin M, Boyden ES, Kaeser PS, Pihan G, Church GM, Yin P.

Nat Biotechnol. 2019 Sep; 9(37)1080-1090

SABER amplifies FISH: enhanced multiplexed imaging of RNA and DNA in cells and tissues.

Kishi JY, Lapan SW, Beliveau BJ, West ER, Zhu A, Sasaki HM, Saka SK, Wang Y, Cepko CL, Yin P.

Nat Methods. 2019 Jun; 6(16)533-544

Islands of retroelements are major components of Drosophila centromeres.

Chang CH, Chavan A, Palladino J, Wei X, Martins NMC, Santinello B, Chen CC, Erceg J, Beliveau BJ, Wu CT, Larracuente AM, Mellone BG.

PLoS Biol. 2019 May; 5(17)e3000241

Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling.

Nir G, Farabella I, Pérez Estrada C, Ebeling CG, Beliveau BJ, Sasaki HM, Lee SD, Nguyen SC, McCole RB, Chattoraj S, Erceg J, AlHaj Abed J, Martins NMC, Nguyen HQ, Hannan MA, Russell S, Durand NC, Rao SSP, Kishi JY, Soler-Vila P, Di Pierro M, Onuchic JN, Callahan SP, Schreiner JM, Stuckey JA, Yin P, Aiden EL, Marti-Renom MA, Wu CT.

PLoS Genet. 2018 Dec; 12(14)e1007872

OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes.

Beliveau BJ, Kishi JY, Nir G, Sasaki HM, Saka SK, Nguyen SC, Wu CT, Yin P.

Proc Natl Acad Sci U S A. 2018 Mar 6; 10(115)E2183-E2192

Accepting Students For:

Rotation, Autumn
Rotation, Spring
Rotation, Summer
Rotation, Winter
Permanent

Lab Information

Location: University of Washington
Building: Foege South
Room: 303A
http://beliveau.io/