faculty
Valerie Daggett
daggett@uw.edu
Professor
University of Washington
,Bioengineering
Biophysical and Structural Biology
Neuroscience
Biophysical studies of protein dynamics, unfolding, and disease.
Faculty Contact Information
Building: Foege
Room: N310B
Box: 355013
Phone: 206-685-7420
Research Summary
My lab uses both experimental and computational methods to explore protein dynamics, unfolding and the effects of disease-associated mutations. Many of our current projects focus on amyloid diseases. Through molecular dynamics simulations we discovered a new, nonstandard secondary structure, alpha-sheet, which we proposed is linked to toxicity. We have now demonstrated that many amyloid proteins, both bacterial and mammalian, linked to disease form alpha-sheet structure in their toxic states. Designed compounds targeting these toxic forms neutralize toxicity and inhibit amyloidogenesis.
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Publications
The following publications were retrieved from PubMed:
The role of α-sheet structure in amyloidogenesis: characterization and implications.
Prosswimmer T, Daggett V.
Open Biol. 2022 Nov; 11(12)220261
Molecular Dynamics Methods for Antibody Design.
Childers MC, Daggett V.
Methods Mol Biol. 2023; (2552)109-124
Modulation of post-powerstroke dynamics in myosin II by 2'-deoxy-ADP.
Childers MC, Geeves M, Daggett V, Regnier M.
Arch Biochem Biophys. 2021 Mar 15; (699)108733
Demakis C, Childers MC, Daggett V.
Protein Sci. 2021 Feb; 2(30)391-407
Edge Strand Dissociation and Conformational Changes in Transthyretin under Amyloidogenic Conditions.
Childers MC, Daggett V.
Biophys J. 2020 Nov 17; 10(119)1995-2009
Myosin dynamics during relaxation in mouse soleus muscle and modulation by 2'-deoxy-ATP.
Ma W, Childers M, Murray J, Moussavi-Harami F, Gong H, Weiss R, Daggett V, Irving T, Regnier M.
J Physiol. 2020 Nov; 22(598)5165-5182
Bromley D, Daggett V.
Protein Sci. 2020 Sep; 9(29)1983-1999
Shared unfolding pathways of unrelated immunoglobulin-like β-sandwich proteins.
Toofanny RD, Calhoun S, Jonsson AL, Daggett V.
Protein Eng Des Sel. 2019 Dec 31; 7(32)331-345
Drivers of α-Sheet Formation in Transthyretin under Amyloidogenic Conditions.
Childers MC, Daggett V.
Biochemistry. 2019 Nov 5; 44(58)4408-4423
Cardiac myosin activation with 2-deoxy-ATP via increased electrostatic interactions with actin.
Powers JD, Yuan CC, McCabe KJ, Murray JD, Childers MC, Flint GV, Moussavi-Harami F, Mohran S, Castillo R, Zuzek C, Ma W, Daggett V, McCulloch AD, Irving TC, Regnier M.
Proc Natl Acad Sci U S A. 2019 Jun 4; 23(116)11502-11507
Shea D, Hsu CC, Bi TM, Paranjapye N, Childers MC, Cochran J, Tomberlin CP, Wang L, Paris D, Zonderman J, Varani G, Link CD, Mullan M, Daggett V.
Proc Natl Acad Sci U S A. 2019 Apr 30; 18(116)8895-8900
Visualizing Protein Folding and Unfolding.
Ferina J, Daggett V.
J Mol Biol. 2019 Apr 5; 8(431)1540-1564
The Role of α-sheet in Amyloid Oligomer Aggregation and Toxicity.
Bi TM, Daggett V.
Yale J Biol Med. 2018 Sep; 3(91)247-255
A Carboxylate to Amide Substitution That Switches Protein Folds.
Gianni S, McCully ME, Malagrinò F, Bonetti D, De Simone A, Brunori M, Daggett V.
Angew Chem Int Ed Engl. 2018 Sep 24; 39(57)12795-12798
Paranjapye N, Daggett V.
J Mol Biol. 2018 Oct 12; 20(430)3764-3773
Childers MC, Towse CL, Daggett V.
Protein Eng Des Sel. 2018 Jun 1; 6(31)191-204
Bleem A, Christiansen G, Madsen DJ, Maric H, Strømgaard K, Bryers JD, Daggett V, Meyer RL, Otzen DE.
J Mol Biol. 2018 Oct 12; 20(430)3751-3763
Childers MC, Daggett V.
J Phys Chem B. 2018 Jul 5; 26(122)6673-6689
Maris NL, Shea D, Bleem A, Bryers JD, Daggett V.
Biochemistry. 2018 Feb 6; 5(57)507-510
Designed α-sheet peptides suppress amyloid formation in Staphylococcus aureus biofilms.
Bleem A, Francisco R, Bryers JD, Daggett V.
NPJ Biofilms Microbiomes. 2017; (3)16
Cheng CJ, Koldsø H, Van der Kamp MW, Schiøtt B, Daggett V.
J Neurochem. 2017 Jul; 1(142)171-182
Towse CL, Akke M, Daggett V.
J Phys Chem B. 2017 Apr 27; 16(121)3933-3945
Insights from molecular dynamics simulations for computational protein design.
Childers MC, Daggett V.
Mol Syst Des Eng. 2017 Feb 1; 1(2)9-33
Molecular mechanisms underlying deoxy-ADP.Pi activation of pre-powerstroke myosin.
Nowakowski SG, Regnier M, Daggett V.
Protein Sci. 2017 Apr; 4(26)749-762
Bromley D, Bauer MR, Fersht AR, Daggett V.
Protein Eng Des Sel. 2016 Sep; 9(29)377-90
Bleem A, Daggett V.
Biotechnol Bioeng. 2017 Jan; 1(114)7-20
Childers MC, Towse CL, Daggett V.
Protein Eng Des Sel. 2016 Jul; 7(29)271-80
Kellock J, Hopping G, Caughey B, Daggett V.
J Mol Biol. 2016 Jun 5; 11(428)2317-2328
Insights into Unfolded Proteins from the Intrinsic ϕ/ψ Propensities of the AAXAA Host-Guest Series.
Towse CL, Vymetal J, Vondrasek J, Daggett V.
Biophys J. 2016 Jan 19; 2(110)348-361
New Dynamic Rotamer Libraries: Data-Driven Analysis of Side-Chain Conformational Propensities.
Towse CL, Rysavy SJ, Vulovic IM, Daggett V.
Structure. 2016 Jan 5; 1(24)187-199
Towse CL, Hopping G, Vulovic I, Daggett V.
Protein Eng Des Sel. 2014 Nov; 11(27)447-55
Rysavy SJ, Beck DA, Daggett V.
Protein Sci. 2014 Nov; 11(23)1584-95
Designed α-sheet peptides inhibit amyloid formation by targeting toxic oligomers.
Hopping G, Kellock J, Barnwal RP, Law P, Bryers J, Varani G, Caughey B, Daggett V.
Elife. 2014 Jul 15; (3)e01681
Molecular dynamics simulations capture the misfolding of the bovine prion protein at acidic pH.
Cheng CJ, Daggett V.
Biomolecules. 2014 Feb 10; 1(4)181-201
Designed Trpzip-3 β-Hairpin Inhibits Amyloid Formation in Two Different Amyloid Systems.
Hopping G, Kellock J, Caughey B, Daggett V.
ACS Med Chem Lett. 2013 Sep 12; 9(4)824-8
DIVE: a graph-based visual-analytics framework for big data.
Rysavy SJ, Bromley D, Daggett V.
IEEE Comput Graph Appl. 2014 Mar-Apr; 2(34)26-37
Merkley ED, Rysavy S, Kahraman A, Hafen RP, Daggett V, Adkins JN.
Protein Sci. 2014 Jun; 6(23)747-59
Structural and dynamic properties of the human prion protein.
Chen W, van der Kamp MW, Daggett V.
Biophys J. 2014 Mar 4; 5(106)1152-63
Cheng CJ, Daggett V.
Prion. 2014 Jan-Feb; 1(8)125-35
DIVE: a data intensive visualization engine.
Bromley D, Rysavy SJ, Su R, Toofanny RD, Schmidlin T, Daggett V.
Bioinformatics. 2014 Feb 15; 4(30)593-5
Analyzing disease-associated protein structures with visual analytics.
Bromley D, Daggett V.
AMIA Jt Summits Transl Sci Proc. 2013; (2013)33
Schmidlin T, Ploeger K, Jonsson AL, Daggett V.
Protein Eng Des Sel. 2013 Aug; 8(26)503-13
Bromley D, Anderson PC, Daggett V.
Biochemistry. 2013 Jun 18; 24(52)4264-73
Wang D, McCully ME, Luo Z, McMichael J, Tu AY, Daggett V, Regnier M.
Arch Biochem Biophys. 2013 Jul 1; 1(535)68-75
Using simulations to provide the framework for experimental protein folding studies.
Rizzuti B, Daggett V.
Arch Biochem Biophys. 2013 Mar; 1-2(531)128-35
Protein Simulation Data in the Relational Model.
Simms AM, Daggett V.
J Supercomput. 2012 Oct 1; 1(62)150-173
Towse CL, Daggett V.
Bioessays. 2012 Dec; 12(34)1060-9
Multimolecule test-tube simulations of protein unfolding and aggregation.
McCully ME, Beck DA, Daggett V.
Proc Natl Acad Sci U S A. 2012 Oct 30; 44(109)17851-6
McCully ME, Beck DA, Daggett V.
Protein Eng Des Sel. 2013 Jan; 1(26)35-45
Benson NC, Daggett V.
J Bioinform Comput Biol. 2012 Aug; 4(10)1250008
Wavelet Analysis of Protein Motion.
Benson NC, Daggett V.
Int J Wavelets Multiresolut Inf Process. 2012 Jul; 4(10)
Structural and functional consequences of the cardiac troponin C L48Q Ca(2+)-sensitizing mutation.
Wang D, Robertson IM, Li MX, McCully ME, Crane ML, Luo Z, Tu AY, Daggett V, Sykes BD, Regnier M.
Biochemistry. 2012 Jun 5; 22(51)4473-87
A comparison of multiscale methods for the analysis of molecular dynamics simulations.
Benson NC, Daggett V.
J Phys Chem B. 2012 Jul 26; 29(116)8722-31
Disruption of the X-loop turn of the prion protein linked to scrapie resistance.
Scouras AD, Daggett V.
Protein Eng Des Sel. 2012 May; 5(25)243-9
A temperature-dependent conformational change of NADH oxidase from Thermus thermophilus HB8.
Merkley ED, Daggett V, Parson WW.
Proteins. 2012 Feb; 2(80)546-55
GB1 is not a two-state folder: identification and characterization of an on-pathway intermediate.
Morrone A, Giri R, Toofanny RD, Travaglini-Allocatelli C, Brunori M, Daggett V, Gianni S.
Biophys J. 2011 Oct 19; 8(101)2053-60
The effect of context on the folding of β-hairpins.
Jonsson AL, Daggett V.
J Struct Biol. 2011 Nov; 2(176)143-50
Toofanny RD, Simms AM, Beck DA, Daggett V.
BMC Bioinformatics. 2011 Aug 10; (12)334
Calhoun S, Daggett V.
Biochemistry. 2011 Jun 14; 23(50)5345-53
van der Kamp MW, Daggett V.
Top Curr Chem. 2011; (305)169-97
Malleability of folding intermediates in the homeodomain superfamily.
Banachewicz W, Religa TL, Schaeffer RD, Daggett V, Fersht AR.
Proc Natl Acad Sci U S A. 2011 Apr 5; 14(108)5596-601
Scouras AD, Daggett V.
Protein Sci. 2011 Feb; 2(20)341-52
Dar TA, Schaeffer RD, Daggett V, Bowler BE.
Biochemistry. 2011 Feb 15; 6(50)1029-41
Daggett V
Protein Eng Des Sel. 2011 Jan; 1-2(24)1
Morrone A, McCully ME, Bryan PN, Brunori M, Daggett V, Gianni S, Travaglini-Allocatelli C.
J Biol Chem. 2011 Feb 4; 5(286)3863-72
Dynameomics: protein dynamics and unfolding across fold space.
Jonsson AL, Schaeffer RD, van der Kamp MW, Daggett V.
Biomol Concepts. 2010 Dec 1; 5-6(1)335-44
Generation of a consensus protein domain dictionary.
Schaeffer RD, Jonsson AL, Simms AM, Daggett V.
Bioinformatics. 2011 Jan 1; 1(27)46-54
Protein folds and protein folding.
Schaeffer RD, Daggett V.
Protein Eng Des Sel. 2011 Jan; 1-2(24)11-9
Chen W, van der Kamp MW, Daggett V.
Biochemistry. 2010 Nov 16; 45(49)9874-81
van der Kamp MW, Daggett V.
J Mol Biol. 2010 Dec 10; 4(404)732-48
Influence of pH on the human prion protein: insights into the early steps of misfolding.
van der Kamp MW, Daggett V.
Biophys J. 2010 Oct 6; 7(99)2289-98
McCully ME, Beck DA, Fersht AR, Daggett V.
Biophys J. 2010 Sep 8; 5(99)1628-36
Toofanny RD, Jonsson AL, Daggett V.
Biophys J. 2010 Jun 2; 11(98)2671-81
Dynameomics: a comprehensive database of protein dynamics.
van der Kamp MW, Schaeffer RD, Jonsson AL, Scouras AD, Simms AM, Toofanny RD, Benson NC, Anderson PC, Merkley ED, Rysavy S, Bromley D, Beck DA, Daggett V.
Structure. 2010 Mar 14; 4(18)423-35
Polymorphisms and disease: hotspots of inactivation in methyltransferases.
Rutherford K, Daggett V.
Trends Biochem Sci. 2010 Oct; 10(35)531-8
Merkley ED, Parson WW, Daggett V.
Protein Eng Des Sel. 2010 May; 5(23)327-36
Principles of ligand binding within a completely buried cavity in HIF2alpha PAS-B.
Key J, Scheuermann TH, Anderson PC, Daggett V, Gardner KH.
J Am Chem Soc. 2009 Dec 9; 48(131)17647-54
Jonsson AL, Scott KA, Daggett V.
Biophys J. 2009 Dec 2; 11(97)2958-66
Law PB, Daggett V.
Protein Eng Des Sel. 2010 Jan; 1(23)27-33
Rutherford K, Daggett V.
Protein Eng Des Sel. 2009 Dec; 12(22)713-21
Schmidlin T, Kennedy BK, Daggett V.
Biophys J. 2009 Sep 16; 6(97)1709-18
Shedding light on amyloidosis with protein engineering.
Daggett V
Protein Eng Des Sel. 2009 Aug; 8(22)445
The consequences of pathogenic mutations to the human prion protein.
van der Kamp MW, Daggett V.
Protein Eng Des Sel. 2009 Aug; 8(22)461-8
Anderson PC, Daggett V.
J Am Chem Soc. 2009 Jul 15; 27(131)9506-15
Rutherford K, Daggett V.
Biochemistry. 2009 Jul 14; 27(48)6450-60
DeMarco ML, Daggett V.
J Neurochem. 2009 Apr; 1(109)60-73
Protein folding and binding: moving into unchartered territory.
Daggett V, Fersht AR.
Curr Opin Struct Biol. 2009 Feb; 1(19)1-2
Dynameomics: large-scale assessment of native protein flexibility.
Benson NC, Daggett V.
Protein Sci. 2008 Dec; 12(17)2038-50
Beck DA, Alonso DO, Inoyama D, Daggett V.
Proc Natl Acad Sci U S A. 2008 Aug 26; 34(105)12259-64
Anderson PC, Daggett V.
Biochemistry. 2008 Sep 9; 36(47)9380-93
McCully ME, Beck DA, Daggett V.
Biochemistry. 2008 Jul 8; 27(47)7079-89
Four human thiopurine s-methyltransferase alleles severely affect protein structure and dynamics.
Rutherford K, Daggett V.
J Mol Biol. 2008 Jun 13; 4(379)803-14
Side-chain dynamics are critical for water permeation through aquaporin-1.
Smolin N, Li B, Beck DA, Daggett V.
Biophys J. 2008 Aug; 3(95)1089-98
Beck DA, Jonsson AL, Schaeffer RD, Scott KA, Day R, Toofanny RD, Alonso DO, Daggett V.
Protein Eng Des Sel. 2008 Jun; 6(21)353-68
Simms AM, Toofanny RD, Kehl C, Benson NC, Daggett V.
Protein Eng Des Sel. 2008 Jun; 6(21)369-77
Dynameomics: a multi-dimensional analysis-optimized database for dynamic protein data.
Kehl C, Simms AM, Toofanny RD, Daggett V.
Protein Eng Des Sel. 2008 Jun; 6(21)379-86
Formation of ice-like water structure on the surface of an antifreeze protein.
Smolin N, Daggett V.
J Phys Chem B. 2008 May 15; 19(112)6193-202
Different disease-causing mutations in transthyretin trigger the same conformational conversion.
Steward RE, Armen RS, Daggett V.
Protein Eng Des Sel. 2008 Mar; 3(21)187-95
Combining experiment and simulation in protein folding: closing the gap for small model systems.
Schaeffer RD, Fersht A, Daggett V.
Curr Opin Struct Biol. 2008 Feb; 1(18)4-9
Merkley ED, Bernard B, Daggett V.
Biochemistry. 2008 Jan 22; 3(47)880-92
The histamine N-methyltransferase T105I polymorphism affects active site structure and dynamics.
Rutherford K, Parson WW, Daggett V.
Biochemistry. 2008 Jan 22; 3(47)893-901
Beck DA, Daggett V.
Biophys J. 2007 Nov 15; 10(93)3382-91
Beck DA, Bennion BJ, Alonso DO, Daggett V.
Methods Enzymol. 2007; (428)373-96
The role of the turn in beta-hairpin formation during WW domain folding.
Sharpe T, Jonsson AL, Rutherford TJ, Daggett V, Fersht AR.
Protein Sci. 2007 Oct; 10(16)2233-9
Molecular mechanism for low pH triggered misfolding of the human prion protein.
DeMarco ML, Daggett V.
Biochemistry. 2007 Mar 20; 11(46)3045-54
Conformational entropy of alanine versus glycine in protein denatured states.
Scott KA, Alonso DO, Sato S, Fersht AR, Daggett V.
Proc Natl Acad Sci U S A. 2007 Feb 20; 8(104)2661-6
Folding mechanisms of proteins with high sequence identity but different folds.
Scott KA, Daggett V.
Biochemistry. 2007 Feb 13; 6(46)1545-56
DeMarco ML, Silveira J, Caughey B, Daggett V.
Biochemistry. 2006 Dec 26; 51(45)15573-82
Direct observation of microscopic reversibility in single-molecule protein folding.
Day R, Daggett V.
J Mol Biol. 2007 Feb 16; 2(366)677-86
Beck DA, White GW, Daggett V.
J Struct Biol. 2007 Mar; 3(157)514-23
Alpha-sheet: The toxic conformer in amyloid diseases?
Daggett V
Acc Chem Res. 2006 Sep; 9(39)594-602
Phi-analysis at the experimental limits: mechanism of beta-hairpin formation.
Petrovich M, Jonsson AL, Ferguson N, Daggett V, Fersht AR.
J Mol Biol. 2006 Jul 21; 4(360)865-81
Scott KA, Randles LG, Moran SJ, Daggett V, Clarke J.
J Mol Biol. 2006 May 26; 1(359)159-73
Scott KA, Alonso DO, Pan Y, Daggett V.
Biochemistry. 2006 Apr 4; 13(45)4153-63
Rutherford K, Bennion BJ, Parson WW, Daggett V.
Biochemistry. 2006 Feb 21; 7(45)2178-88
Armen RS, Daggett V.
Biochemistry. 2005 Dec 13; 49(44)16098-107
Local environmental effects on the structure of the prion protein.
DeMarco ML, Daggett V.
C R Biol. 2005 Oct-Nov; 10-11(328)847-62
Armen RS, Bernard BM, Day R, Alonso DO, Daggett V.
Proc Natl Acad Sci U S A. 2005 Sep 20; 38(102)13433-8
Ensemble versus single-molecule protein unfolding.
Day R, Daggett V.
Proc Natl Acad Sci U S A. 2005 Sep 20; 38(102)13445-50
White GW, Gianni S, Grossmann JG, Jemth P, Fersht AR, Daggett V.
J Mol Biol. 2005 Jul 22; 4(350)757-75
Jemth P, Day R, Gianni S, Khan F, Allen M, Daggett V, Fersht AR.
J Mol Biol. 2005 Jul 8; 2(350)363-78
Day R, Daggett V.
Protein Sci. 2005 May; 5(14)1242-52
Ferguson N, Day R, Johnson CM, Allen MD, Daggett V, Fersht AR.
J Mol Biol. 2005 Apr 8; 4(347)855-70
Insight into ribonuclease A domain swapping by molecular dynamics unfolding simulations.
Esposito L, Daggett V.
Biochemistry. 2005 Mar 8; 9(44)3358-68
Cutoff size need not strongly influence molecular dynamics results for solvated polypeptides.
Beck DA, Armen RS, Daggett V.
Biochemistry. 2005 Jan 18; 2(44)609-16
The early steps in the unfolding of azurin.
Rizzuti B, Daggett V, Guzzi R, Sportelli L.
Biochemistry. 2004 Dec 14; 49(43)15604-9
Preventing misfolding of the prion protein by trimethylamine N-oxide.
Bennion BJ, DeMarco ML, Daggett V.
Biochemistry. 2004 Oct 19; 41(43)12955-63
Armen RS, Alonso DO, Daggett V.
Structure. 2004 Oct; 10(12)1847-63
Diffusing and colliding: the atomic level folding/unfolding pathway of a small helical protein.
DeMarco ML, Alonso DO, Daggett V.
J Mol Biol. 2004 Aug 20; 4(341)1109-24
Methods for molecular dynamics simulations of protein folding/unfolding in solution.
Beck DA, Daggett V.
Methods. 2004 Sep; 1(34)112-20
Armen RS, DeMarco ML, Alonso DO, Daggett V.
Proc Natl Acad Sci U S A. 2004 Aug 10; 32(101)11622-7
Jemth P, Gianni S, Day R, Li B, Johnson CM, Daggett V, Fersht AR.
Proc Natl Acad Sci U S A. 2004 Apr 27; 17(101)6450-5
Bennion BJ, Daggett V.
Proc Natl Acad Sci U S A. 2004 Apr 27; 17(101)6433-8
Testing protein-folding simulations by experiment: B domain of protein A.
Sato S, Religa TL, Daggett V, Fersht AR.
Proc Natl Acad Sci U S A. 2004 May 4; 18(101)6952-6
From conversion to aggregation: protofibril formation of the prion protein.
DeMarco ML, Daggett V.
Proc Natl Acad Sci U S A. 2004 Feb 24; 8(101)2293-8
Ultrafast folding of alpha3D: a de novo designed three-helix bundle protein.
Zhu Y, Alonso DO, Maki K, Huang CY, Lahr SJ, Daggett V, Roder H, DeGrado WF, Gai F.
Proc Natl Acad Sci U S A. 2003 Dec 23; 26(100)15486-91
All-atom simulations of protein folding and unfolding.
Day R, Daggett V.
Adv Protein Chem. 2003; (66)373-403
Unifying features in protein-folding mechanisms.
Gianni S, Guydosh NR, Khan F, Caldas TD, Mayor U, White GW, DeMarco ML, Daggett V, Fersht AR.
Proc Natl Acad Sci U S A. 2003 Nov 11; 23(100)13286-91
A consensus view of fold space: combining SCOP, CATH, and the Dali Domain Dictionary.
Day R, Beck DA, Armen RS, Daggett V.
Protein Sci. 2003 Oct; 10(12)2150-60
Alonso DO, An C, Daggett V.
Philos Trans A Math Phys Eng Sci. 2002 Jun 15; 1795(360)1165-78
Molecular basis for the extensibility of elastin.
Li B, Daggett V.
J Muscle Res Cell Motil. 2002; 5-6(23)561-73
The present view of the mechanism of protein folding.
Daggett V, Fersht A.
Nat Rev Mol Cell Biol. 2003 Jun; 6(4)497-502
The role of alpha-, 3(10)-, and pi-helix in helix-->coil transitions.
Armen R, Alonso DO, Daggett V.
Protein Sci. 2003 Jun; 6(12)1145-57
The molecular basis for the chemical denaturation of proteins by urea.
Bennion BJ, Daggett V.
Proc Natl Acad Sci U S A. 2003 Apr 29; 9(100)5142-7
A microscopic view of peptide and protein solvation.
Beck DA, Alonso DO, Daggett V.
Biophys Chem. 2003; 1-3(100)221-37
The complete folding pathway of a protein from nanoseconds to microseconds.
Mayor U, Guydosh NR, Johnson CM, Grossmann JG, Sato S, Jas GS, Freund SM, Alonso DO, Daggett V, Fersht AR.
Nature. 2003 Feb 20; 6925(421)863-7
The hydration of amides in helices; a comprehensive picture from molecular dynamics, IR, and NMR.
Walsh ST, Cheng RP, Wright WW, Alonso DO, Daggett V, Vanderkooi JM, DeGrado WF.
Protein Sci. 2003 Mar; 3(12)520-31
Li B, Daggett V.
Biopolymers. 2003 Jan; 1(68)121-9
Is there a unifying mechanism for protein folding?
Daggett V, Fersht AR.
Trends Biochem Sci. 2003 Jan; 1(28)18-25
Protein conformation and diagnostic tests: the prion protein.
Bennion BJ, Daggett V.
Clin Chem. 2002 Dec; 12(48)2105-14
Increasing temperature accelerates protein unfolding without changing the pathway of unfolding.
Day R, Bennion BJ, Ham S, Daggett V.
J Mol Biol. 2002 Sep 6; 1(322)189-203
Stabilization of globular proteins via introduction of temperature-activated elastin-based switches.
Li B, Alonso DO, Daggett V.
Structure. 2002 Jul; 7(10)989-98
Molecular dynamics simulations of the protein unfolding/folding reaction.
Daggett V
Acc Chem Res. 2002 Jun; 6(35)422-9
Probing the energy landscape of protein folding/unfolding transition states.
De Jong D, Riley R, Alonso DO, Daggett V.
J Mol Biol. 2002 May 24; 1(319)229-42
Protein folding and unfolding at atomic resolution.
Fersht AR, Daggett V.
Cell. 2002 Feb 22; 4(108)573-82
Zou Q, Bennion BJ, Daggett V, Murphy KP.
J Am Chem Soc. 2002 Feb 20; 7(124)1192-202
Loss of a metal-binding site in gelsolin leads to familial amyloidosis-Finnish type.
Kazmirski SL, Isaacson RL, An C, Buckle A, Johnson CM, Daggett V, Fersht AR.
Nat Struct Biol. 2002 Feb; 2(9)112-6
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Permanent
Lab Information
Location: University of Washington
Building: Foege
Room: N351A
Box: 355013
Phone: 206-543-9305
http://depts.washington.edu/daglab
Building: Foege
Room: N351A
Box: 355013
Phone: 206-543-9305
http://depts.washington.edu/daglab