faculty

Harmit Malik

hsmalik@fhcrc.org
Member

Fred Hutch

Basic Sciences

Gene Expression, Cell Cycle & Chromosome Biology

Genetics, Genomics & Evolution

Microbiology, Infection & Immunity

Evolutionary and functional studies of genetic conflicts

Faculty Contact Information

Building: Weintraub Building Room: A2-205 Box: A2-025 Phone: 206-667-5204 Alt Phone: 206-667-4512 http://research.fhcrc.org/malik/en.html

Research Summary

My lab studies how eukaryotic genetics and epigenetics have been shaped by diverse genetic conflicts. Projects in the lab can be roughly classified into two types: extrinsic (between genomes) conflicts that shape genes involved in host-pathogen interactions, and intrinsic (within genome) conflicts that shape eukaryotic genomes. We use studies that combine insights from evolutionary biology together with molecular/ cellular biology, virology, and genetics. While our primary research organism is Drosophila, we study a variety of model and non-systems depending on the research question.

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Publications

The following publications were retrieved from PubMed:

Combinatorial mutagenesis of rapidly evolving residues yields super-restrictor antiviral proteins.

Colón-Thillet R, Hsieh E, Graf L, McLaughlin RN Jr, Young JM, Kochs G, Emerman M, Malik HS.

PLoS Biol. 2019 Oct; 10(17)e3000181

EvoChromo: towards a synthesis of chromatin biology and evolution.

Drinnenberg IA, Berger F, Elsässer SJ, Andersen PR, Ausió J, Bickmore WA, Blackwell AR, Erwin DH, Gahan JM, Gaut BS, Harvey ZH, Henikoff S, Kao JY, Kurdistani SK, Lemos B, Levine MT, Luger K, Malik HS, Martín-Durán JM, Peichel CL, Renfree MB, Rutowicz K, Sarkies P, Schmitz RJ, Technau U, Thornton JW, Warnecke T, Wolfe KH.

Development. 2019 Sep 26; 19(146)

Functional metagenomics-guided discovery of potent Cas9 inhibitors in the human microbiome.

Forsberg KJ, Bhatt IV, Schmidtke DT, Javanmardi K, Dillard KE, Stoddard BL, Finkelstein IJ, Kaiser BK, Malik HS.

Elife. 2019 Sep 10; (8)

The PLOS Biology XV Collection: 15 Years of Exceptional Science Highlighted across 12 Months.

Richardson LA, Schmid SL, Bhandoola A, Harly C, Hedenström A, Laub MT, Mace GM, Sengupta P, Stock AM, Read AF, Malik HS, Estelle M, Lowell S, Kimmelman J.

PLoS Biol. 2019 Feb; 2(17)e3000180

Accepting Students For:

Rotation, Autumn
Rotation, Spring
Rotation, Winter
Permanent

Lab Information

Location: Fred Hutch
Building: Weintraub
Room: A2-205
Box: A2-025
Phone: 206-667-4512
http://research.fhcrc.org/malik/en.html