faculty

Harmit Malik

hsmalik@fhcrc.org

Member

Fred Hutch

Basic Sciences

Gene Expression, Cell Cycle & Chromosome Biology

Genetics, Genomics & Evolution

Microbiology, Infection & Immunity

Evolutionary and functional studies of genetic conflicts

Faculty Contact Information

Building: Weintraub Building Room: A2-205 Box: A2-025 Phone: 206-667-5204 Alt Phone: 206-667-4512 http://research.fhcrc.org/malik/en.html

Research Summary

My lab studies how eukaryotic genetics and epigenetics have been shaped by diverse genetic conflicts. Projects in the lab can be roughly classified into two types: extrinsic (between genomes) conflicts that shape genes involved in host-pathogen interactions, and intrinsic (within genome) conflicts that shape eukaryotic genomes. We use studies that combine insights from evolutionary biology together with molecular/ cellular biology, virology, and genetics. While our primary research organism is Drosophila, we study a variety of model and non-systems depending on the research question.

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Publications

The following publications were retrieved from PubMed:

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.

Gordon DE, Jang GM, Bouhaddou M, Xu J, Obernier K, White KM, O'Meara MJ, Rezelj VV, Guo JZ, Swaney DL, Tummino TA, Huettenhain R, Kaake RM, Richards AL, Tutuncuoglu B, Foussard H, Batra J, Haas K, Modak M, Kim M, Haas P, Polacco BJ, Braberg H, Fabius JM, Eckhardt M, Soucheray M, Bennett MJ, Cakir M, McGregor MJ, Li Q, Meyer B, Roesch F, Vallet T, Mac Kain A, Miorin L, Moreno E, Naing ZZC, Zhou Y, Peng S, Shi Y, Zhang Z, Shen W, Kirby IT, Melnyk JE, Chorba JS, Lou K, Dai SA, Barrio-Hernandez I, Memon D, Hernandez-Armenta C, Lyu J, Mathy CJP, Perica T, Pilla KB, Ganesan SJ, Saltzberg DJ, Rakesh R, Liu X, Rosenthal SB, Calviello L, Venkataramanan S, Liboy-Lugo J, Lin Y, Huang XP, Liu Y, Wankowicz SA, Bohn M, Safari M, Ugur FS, Koh C, Savar NS, Tran QD, Shengjuler D, Fletcher SJ, O'Neal MC, Cai Y, Chang JCJ, Broadhurst DJ, Klippsten S, Sharp PP, Wenzell NA, Kuzuoglu D, Wang HY, Trenker R, Young JM, Cavero DA, Hiatt J, Roth TL, Rathore U, Subramanian A, Noack J, Hubert M, Stroud RM, Frankel AD, Rosenberg OS, Verba KA, Agard DA, Ott M, Emerman M, Jura N, von Zastrow M, Verdin E, Ashworth A, Schwartz O, d'Enfert C, Mukherjee S, Jacobson M, Malik HS, Fujimori DG, Ideker T, Craik CS, Floor SN, Fraser JS, Gross JD, Sali A, Roth BL, Ruggero D, Taunton J, Kortemme T, Beltrao P, Vignuzzi M, García-Sastre A, Shokat KM, Shoichet BK, Krogan NJ.

Nature. 2020 Apr 30;

Ancient co-retention of paralogs of Cid centromeric histones and Cal1 chaperones in mosquito species.

Kursel LE, Welsh FC, Malik HS.

Mol Biol Evol. 2020 Mar 3;

Dynamic evolution of de novo DNA methyltransferases in rodent and primate genomes.

Molaro A, Malik HS, Bourc'his D.

Mol Biol Evol. 2020 Feb 20;

P2X1 Selective Antagonists Block HIV-1 Infection through Inhibition of Envelope Conformation-Dependent Fusion.

Soare AY, Malik HS, Durham ND, Freeman TL, Alvarez R, Patel F, Satija N, Upadhyay C, Hioe CE, Chen BK, Swartz TH.

J Virol. 2020 Feb 28; 6(94)

Hybridization promotes asexual reproduction in Caenorhabditis nematodes.

Lamelza P, Young JM, Noble LM, Caro L, Isakharov A, Palanisamy M, Rockman MV, Malik HS, Ailion M.

PLoS Genet. 2019 Dec; 12(15)e1008520

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Phone: 206-667-4512
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