faculty
Liangcai Gu
gulc@uw.edu
Assistant Professor
University of Washington
,Biochemistry
Computational Biology
Developmental Biology, Stem Cells & Aging
Genetics, Genomics & Evolution
Neuroscience
Protein sensors and spatial omics for aging, pain, and addiction
Faculty Contact Information
Building: Health Sciences Building
Room: J579
Box: 357350
Phone: 206-221-0382
https://sites.uw.edu/biochemistry/faculty/liangcai-gu/
Research Summary
We develop and use integrated approaches for spatiotemporal, multimodal measure and control of complex living systems from molecules to tissues. We recently created protein-based sensors and actuators for chemical sensing and chemogenetic or optogenetic manipulation of cell behaviors in behaving animals. We developed polony gel (clonal DNA cluster array of ≤ 1-µm features)-based spatial barcoding and sequencing to spatially map single-cell transcriptomes and proteomes in morphologically intact tissues to study physiological, pathological, and pharmacological changes. Techniques frequently used in current projects include protein display and high-throughput screening, polony gel fabrication and sequencing, Pixel-seq, SMI-seq, mass spectrometry, and fluorescence imaging. We are applying new tools to study cellular senescence in tissues and brain mechanisms of chronic pain and addiction, to improve safety and efficacy of gene and cell therapies, and to guide the evolution of multi-enzyme machinery making high-value chemicals.
DEI Statement
The mission of our training and research is to educate new-generation of scientists—with diversity, equity, and inclusion as our core values—and to develop accessible transformative technologies to advance the understanding and treatment of aging, chronic pain, and drug addiction. Our laboratory aims to provide a highly inclusive environment to help trainees to thrive personally and academically.
Training Summary
More Alike Than Not: Intersectional Equity Training (School of Medicine DEI training) – 2021
Implicit Bias Training Course – 2021
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string(16) "2002/05/31 00:00"
["sortfirstauthor"]=>
string(4) "Gu L"
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Publications
The following publications were retrieved from PubMed:
Polony gels enable amplifiable DNA stamping and spatial transcriptomics of chronic pain.
Fu X, Sun L, Dong R, Chen JY, Silakit R, Condon LF, Lin Y, Lin S, Palmiter RD, Gu L.
Cell. 2022 Nov 23; 24(185)4621-4633.e17
Zhang X, Pan Y, Kang S, Gu L.
Front Bioeng Biotechnol. 2022; (10)844405
Defining molecular glues with a dual-nanobody cannabidiol sensor.
Cao S, Kang S, Mao H, Yao J, Gu L, Zheng N.
Nat Commun. 2022 Feb 10; 1(13)815
Chen X, Kang S, Ikbal MA, Zhao Z, Pan Y, Zuo J, Gu L, Wang C.
Biosens Bioelectron. 2022 Apr 15; (202)113971
Huang Z, Li Z, Zhang X, Kang S, Dong R, Sun L, Fu X, Vaisar D, Watanabe K, Gu L.
ACS Synth Biol. 2020 Dec 18; 12(9)3322-3333
Gomez-Castillo L, Watanabe K, Jiang H, Kang S, Gu L.
J Vis Exp. 2020 Jan 14; 155
Kang S, Davidsen K, Gomez-Castillo L, Jiang H, Fu X, Li Z, Liang Y, Jahn M, Moussa M, DiMaio F, Gu L.
J Am Chem Soc. 2019 Jul 17; 28(141)10948-10952
Structural Basis for Cyclopropanation by a Unique Enoyl-Acyl Carrier Protein Reductase.
Khare D, Hale WA, Tripathi A, Gu L, Sherman DH, Gerwick WH, Håkansson K, Smith JL.
Structure. 2015 Dec 1; 12(23)2213-2223
Multiplex single-molecule interaction profiling of DNA-barcoded proteins.
Gu L, Li C, Aach J, Hill DE, Vidal M, Church GM.
Nature. 2014 Nov 27; 7528(515)554-7
Chang Z, Gu L.
Sci China Life Sci. 2014 Oct; 10(57)1039-40
Improved cell-free RNA and protein synthesis system.
Li J, Gu L, Aach J, Church GM.
PLoS One. 2014; 9(9)e106232
Structure and activity of DmmA, a marine haloalkane dehalogenase.
Gehret JJ, Gu L, Geders TW, Brown WC, Gerwick L, Gerwick WH, Sherman DH, Smith JL.
Protein Sci. 2012 Feb; 2(21)239-48
Busche A, Gottstein D, Hein C, Ripin N, Pader I, Tufar P, Eisman EB, Gu L, Walsh CT, Sherman DH, Löhr F, Güntert P, Dötsch V.
ACS Chem Biol. 2012 Feb 17; 2(7)378-86
Gu L, Eisman EB, Dutta S, Franzmann TM, Walter S, Gerwick WH, Skiniotis G, Sherman DH.
Angew Chem Int Ed Engl. 2011 Mar 14; 12(50)2795-8
Gehret JJ, Gu L, Gerwick WH, Wipf P, Sherman DH, Smith JL.
J Biol Chem. 2011 Apr 22; 16(286)14445-54
Conformational switch triggered by alpha-ketoglutarate in a halogenase of curacin A biosynthesis.
Khare D, Wang B, Gu L, Razelun J, Sherman DH, Gerwick WH, Håkansson K, Smith JL.
Proc Natl Acad Sci U S A. 2010 Aug 10; 32(107)14099-104
Polyketide decarboxylative chain termination preceded by o-sulfonation in curacin a biosynthesis.
Gu L, Wang B, Kulkarni A, Gehret JJ, Lloyd KR, Gerwick L, Gerwick WH, Wipf P, Håkansson K, Smith JL, Sherman DH.
J Am Chem Soc. 2009 Nov 11; 44(131)16033-5
Metamorphic enzyme assembly in polyketide diversification.
Gu L, Wang B, Kulkarni A, Geders TW, Grindberg RV, Gerwick L, Håkansson K, Wipf P, Smith JL, Gerwick WH, Sherman DH.
Nature. 2009 Jun 4; 7247(459)731-5
New tricks from ancient algae: natural products biosynthesis in marine cyanobacteria.
Jones AC, Gu L, Sorrels CM, Sherman DH, Gerwick WH.
Curr Opin Chem Biol. 2009 Apr; 2(13)216-23
Sharp K, Arthur KE, Gu L, Ross C, Harrison G, Gunasekera SP, Meickle T, Matthew S, Luesch H, Thacker RW, Sherman DH, Paul VJ.
Appl Environ Microbiol. 2009 May; 9(75)2879-88
GNAT-like strategy for polyketide chain initiation.
Gu L, Geders TW, Wang B, Gerwick WH, Håkansson K, Smith JL, Sherman DH.
Science. 2007 Nov 9; 5852(318)970-4
Geders TW, Gu L, Mowers JC, Liu H, Gerwick WH, Håkansson K, Sherman DH, Smith JL.
J Biol Chem. 2007 Dec 7; 49(282)35954-63
Gu L, Jia J, Liu H, Håkansson K, Gerwick WH, Sherman DH.
J Am Chem Soc. 2006 Jul 19; 28(128)9014-5
Fu X, Liu C, Liu Y, Feng X, Gu L, Chen X, Chang Z.
Biochem Biophys Res Commun. 2003 Oct 17; 2(310)412-20
Abulimiti A, Fu X, Gu L, Feng X, Chang Z.
J Mol Biol. 2003 Feb 28; 4(326)1013-23
Gu L, Abulimiti A, Li W, Chang Z.
J Mol Biol. 2002 May 31; 2(319)517-26
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Lab Information
Location: University of Washington
Building: HSB
Room: J579
Phone: 206-221-7730
https://www.uwgulab.org/
Building: HSB
Room: J579
Phone: 206-221-7730
https://www.uwgulab.org/